By Gloria Coruzzi, Rodrigo Gutiérrez
Plant platforms Biology is a superb new addition to the more and more recognized and revered Annual Plant Reviews. cut up into elements, this identify deals the reader:
A primary conceptual framework for structures Biology together with community TheoryContent:
Chapter 1 structures Biology: ideas and functions in Plant learn (pages 1–40): Gloria M. Coruzzi, Alejandro R. Burga, Manpreet S. Katari and Rodrigo A. Gutierrez
Chapter 2 an outline of platforms Biology (pages 41–66): Reka Albert and Sarah M. Assmann
Chapter three Prokaryotic structures Biology (pages 67–136): Thadeous Kacmarczyk, Peter Waltman and Richard Bonneau
Chapter four Animal structures Biology: in the direction of a platforms View of improvement in C. Elegans (pages 137–165): Anita Fernandez, Fabio Piano and Kristin C. Gunsalus
Chapter five software program instruments for platforms Biology: Visualizing the results of N Experiments on M Entities (pages 167–195): Chris Poultney and Dennis Shasha
Chapter 6 The Plant Genome: deciphering the Transcriptional Hardwiring (pages 196–228): Erich Grotewold and Nathan Springer
Chapter 7 The RNA international: deciding upon miRNA?Target RNA Pairs as attainable lacking hyperlinks in Multi?Network versions (pages 229–242): Pamela J. eco-friendly and Blake C. Meyers
Chapter eight Proteomics: atmosphere the degree for platforms Biology (pages 243–257): Scott C. Peck
Chapter nine Metabolomics: Integrating the Metabolome and the Proteome for structures Biology (pages 258–289): Wolfram Weckwerth
Chapter 10 From the Ionome to the Genome: deciding upon the Gene Networks that keep an eye on the Mineral content material of vegetation (pages 290–303): Mary Lou Guerinot, Ivan Baxter and David E. Salt
Chapter eleven improvement and platforms Biology: using the Genomics Wave in the direction of a platforms realizing of Root improvement (pages 304–330): Siobhan M. Brady and Philip N. Benfey
Chapter 12 views on Ecological and Evolutionary structures Biology (pages 331–349): Christina L. Richards, Yoshie Hanzawa, Manpreet S. Katari, Ian M. Ehrenreich, Kathleen E. Engelmann and Michael D. Purugganan
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Additional info for Annual Plant Reviews Volume 35: Plant Systems Biology
This is especially true in plants. Plants are known to have a tremendous enzymatic capacity, allowing for the production of an estimated ∼200 000 different small molecules (Fiehn, 2002). Finding the c01 BLBK130-Coruzzi December 30, 2008 16:42 Char Count= Systems Biology 15 equilibrium between coverage and accuracy of measurement is therefore key in the metabolomics field. With respect to the technology used to explore the metabolome, classical approaches use gas chromatography–mass spectrometry (GC–MS).
In 2000, the complete genome sequence of the plant A. thaliana was published (Initiative, 2000). , 2005). , 2007) are available. , 2008). Genomes provide the parts lists as far as genes and their products (proteins and RNAs) are concerned. Due to lack of financial support or simply due to the large size, the genomes of many species are not and may not be completely sequenced. In addition, much of the DNA in large genomes is thought to correspond to repetitive DNA and transposable elements (Bennet and Ilia, 1995).
In contrast to gene essentiality, genetic interactions seem not to be so widely conserved across species (Lehner, 2007). Another strategy consists in the prediction of genetic interactions. Zhong and Sternberg integrated information about anatomical expression patterns, phenotypes, functional annotations, microarray co-expression and protein interactions to predict C. elegans genetic interactions (Zhong and Sternberg, 2006). With their model, they could identify 12 genetic interaction partners of the let-60/Ras gene and 2 of the itr-1 gene.
Annual Plant Reviews Volume 35: Plant Systems Biology by Gloria Coruzzi, Rodrigo Gutiérrez